PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 298aa MW: 33248.8 Da PI: 5.2351

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC18072_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.8e-09	29	74	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a + + ++ +W ++a++++ g+t +++ ++ RrC18072_p1 29 KWTAEENKKFENALAFYDKDtpdRWFKVAAMLP-GKTVGDVIKQYRE 74 8******************************.****9999986 PP
2	Myb_DNA-binding	48.6	1.9e-15	141	185	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky RrC18072_p1 141 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 185 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-4	24	75	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.561	25	80	IPR017884	SANT domain
SMART	SM00717	2.1E-10	26	78	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.2E-11	28	82	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-7	29	74	IPR001005	SANT/Myb domain
CDD	cd00167	4.42E-8	29	75	No hit	No description
PROSITE profile	PS51294	21.845	134	190	IPR017930	Myb domain
SuperFamily	SSF46689	1.66E-17	136	189	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-18	137	189	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.7E-13	138	185	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-14	138	188	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-11	141	186	No hit	No description
Pfam	PF00249	7.8E-13	141	185	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MNRGIEVMSP ATYSETSSNW LFQENRGTKW TAEENKKFEN ALAFYDKDTP DRWFKVAAML 60 PGKTVGDVIK QYRELEEDVS DIEAGLIPIP GYASDSFTLD WGGDDAGNNG FNMNGYYFAT 120 VGGKRGSVAR AAEHERKKGV PWTEEEHRQF LMGLKKYGKG DWRNIARNFV TTRTPTQVAS 180 HAQKYFIRQV NGGKDKRRSS IHDITTVNIP DSLDAAAADT ATANAPCSPP SLGGSQREGS 240 GQWEGQTIYD ETAAAFFNQN TFQETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-17	27	94	8	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466734.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	6e-92	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D3C4X3	0.0	A0A0D3C4X3_BRAOL; Uncharacterized protein
STRING	Bo4g187390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	0.0	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]