PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17_p15
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 444aa    MW: 48744.9 Da    PI: 9.1886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17_p15genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057799123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F r  nL+ H r H
  RrC17_p15 77 FICEVCNKGFQREQNLQLHRRGH 99
               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.7E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997799IPR007087Zinc finger, C2H2
SMARTSM003550.00527799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-77799No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035552118148IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-7148173No hitNo description
SMARTSM00355110153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSSSNNNTIS SSSSLSFPLL ATGANNFNRE ETAMAMNQQR NSVSPPPRRQ RNKPGNPSSD  60
AEVIALTPEE IMATYRFICE VCNKGFQREQ NLQLHRRGHG LSYTLKQKSD EEVRRKVYVC  120
PEPTCVYHDP SRALGDLTGI KKHYYRKHGE KKFKCDKCSR CYAVESDYKA HSKICGTKEY  180
RCVCGTKFSR KDSYDTHRTF CALLVEPARN PTVGFTEMAA AAGGSGGRHG FYGGASPALT  240
HNHFGNNSNT GFAPLAAGYN LNRSSPQTYE DFVPQPTNPN HGPTNFPMRY PSNQELLAQN  300
DQNLMNQHGL INSNNNNNLF NPGYFQDNTK NLSDQTGVPS LFNHADNNVP SALPRGSSVA  360
ANNFGGSGNG NFQGQMNSLA ATSDHQARPG SSIFDHRFGN NLRMGGTGRQ TLDFLGVNGR  420
GGRNGPPLDV NMKFPDPNNP FGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-22149206360Zinc finger protein JACKDAW
5b3h_F3e-22149206360Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894990.0AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488197.10.0PREDICTED: LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A078I3250.0A0A078I325_BRANA; BnaA06g09400D protein
TrEMBLA0A3P5YDD10.0A0A3P5YDD1_BRACM; Uncharacterized protein
STRINGBra026204.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-169C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]