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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC1799_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
HSF |
| Protein Properties |
Length: 405aa MW: 45531.1 Da PI: 4.6052 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC1799_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 108.2 | 6.2e-34 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k++++++d++l+ +isw +g sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +g+k+ll++i+
RrC1799_p1 45 FLSKTFDLVDDPSLDPVISWGLTGASFVVWDPVEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRGQKHLLKNIH 132
9****************************************************************999.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r++s
RrC1799_p1 133 RRRS 136
*987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009408 | Biological Process | response to heat |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MSPEKDGVSK PTPLSIPIST RPESDVASPL PMPLDILHGN PIPPFLSKTF DLVDDPSLDP 60
VISWGLTGAS FVVWDPVEFA RIILPRNFKH NNFSSFVRQL NTYGFRKIDT DKWEFANEAF 120
LRGQKHLLKN IHRRRSPQSN QVCSSNSQSQ GSPTEVGEEI EKLRKERRAL MEEMVELQQQ 180
NRGTARHVDT VNQRLKAAEQ RQKQMLSFLA KLFQNPGFLD RLKNLKGEGG GGGGALGFGK 240
ARKKFIKHSP TEGEIVKYEA DDWERLLMSE EETENVPLSS QGMMTSTDPK GKNLMNPSEE 300
EEEEEMMNQD YLMSFPALPE GVIKQEEMMW SMGFDTTTTI PSFSNEDMWG NTMDYNVSEF 360
GSVAETTSGG GGCFPDVCWE QFVAGMTETG FNWPPGDDST PMDDH
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 9e-25 | 42 | 139 | 17 | 125 | Heat shock factor protein 1 |
| 5d5u_B | 1e-24 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 1e-24 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 1e-24 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK117318 | 1e-159 | AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09. |
| Publications
? help Back to Top |
- Jung HS, et al.
Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
[PMID:23918368] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nie S,Yue H,Xing D
A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
Plant Physiol., 2016.
[PMID:26099269] - Hu Z, et al.
Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
Plant J., 2015. 84(6): p. 1178-91
[PMID:26576681] - Song C,Chung WS,Lim CO
Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
Mol. Cells, 2016. 39(6): p. 477-83
[PMID:27109422] - Kim GD,Cho YH,Lee BH,Yoo SD
STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
Plant Physiol., 2017. 173(4): p. 2370-2382
[PMID:28223317] - Song C,Lee J,Kim T,Hong JC,Lim CO
VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
Planta, 2018. 247(6): p. 1439-1448
[PMID:29536220]
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