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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC17852_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 513aa MW: 56821.6 Da PI: 5.1501 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC17852_p1 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +l+++v+++G g+W+++ + g+ R++k+c++rw ++l
RrC17852_p1 42 KGPWTSTEDGILINYVRKHGEGNWSAVHKLTGLARCGKSCRLRWANHL 89
79******************************************9986 PP
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| 2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+++++E+ l+v+ ++++G++ W++ a++++ gRt++++k++w++
RrC17852_p1 95 KGAFSQDEERLIVQMHAKMGNK-WARMAERLP-GRTDNEIKNYWNT 138
799*******************.*********.***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 513 aa
Download sequence Send
to blast |
MSYTGESDDR MHHPSIYDES LSSPAGDNNI CRSRGKASVL KKGPWTSTED GILINYVRKH 60
GEGNWSAVHK LTGLARCGKS CRLRWANHLR PNLKKGAFSQ DEERLIVQMH AKMGNKWARM 120
AERLPGRTDN EIKNYWNTRI KRRRRAGLPL YSPDIHVEDL ESSEEYITSN ITRVDRRRRQ 180
DCLLLGNPKA NDDVLFDDLN FATSLLPGAS DVSDMFECNM LVTVASSSPY ESYMPPILPS 240
PKQLQESGSL FPMCSSNIKQ ELHSPERFQN AASQKSPRSC SISPCDPPPY GNQHPSDVLI 300
PDNSHTFTDG MLLTSKPLFG AVKLELPSFQ YSETSEFDQW KTMTPSPPHS EDPLDSVDAY 360
IQSPPPLEIE ESSDTGLLDM LLHEAKIKTS AKRSLALPEI PVPTQLSAGD DNSPDSAGNV 420
VVKTEELDQV WEPKRVVDVT RPDVLLASSW LDQQGCFGIV SDSSSMSDAL ALLLGGGEHI 480
ENSYVTVESS SSGQAQQGVG SCTWTNMPPV WSL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Allen RS, et al.
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(41): p. 16371-6
[PMID:17916625] - Li J,Reichel M,Millar AA
Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis.
PLoS Genet., 2014. 10(3): p. e1004232
[PMID:24626050] - Li Y,Alonso-Peral M,Wong G,Wang MB,Millar AA
Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses.
BMC Plant Biol., 2016. 16(1): p. 179
[PMID:27542984] - Liu B,De Storme N,Geelen D
Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis.
Plant Physiol., 2017. 173(1): p. 338-353
[PMID:27621423] - Zheng Z, et al.
Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
Plant Physiol., 2017. 174(3): p. 1764-1778
[PMID:28515145] - Xue T,Liu Z,Dai X,Xiang F
Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
Plant Sci., 2017. 262: p. 182-189
[PMID:28716415] - Kim MH, et al.
Poplar MYB transcription factor PtrMYB012 and its Arabidopsis AtGAMYB orthologs are differentially repressed by the Arabidopsis miR159 family.
Tree Physiol., 2018. 38(6): p. 801-812
[PMID:29301041]
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