PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17751_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 355aa    MW: 40523.4 Da    PI: 7.5701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17751_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.6e-07197219123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++Cgk F+r  nL+ H+r H
  RrC17751_p1 197 HYCQICGKGFKRDANLRMHMRAH 219
                  68*******************99 PP
2zf-C2H212.40.00047319334621
                  TTEEESSHHHHHHHHH CS
      zf-C2H2   6 CgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L++H +
  RrC17751_p1 319 CGTRFSRKDKLMSHVS 334
                  **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.44E-6195222No hitNo description
PROSITE profilePS5015712.632197224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6197224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028197219IPR015880Zinc finger, C2H2-like
PfamPF128740.0023198217No hitNo description
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355160249282IPR015880Zinc finger, C2H2-like
SMARTSM0035555287309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSCFSETNSS STVYMNPMPV ATRSSEEGDG ISLSLLLDLS TIQDKVHEIQ SLINFFMISP  60
NNNNQKSTSS LAMSNVGSLV QEMITAASSM MHTCQKLQIS TSNNSNDDAN QTADGMFMEF  120
SQDFDPDHDF MGESSTNLLG LQERGHDSFL DHTGQNLDWY GTQTTNPKND HQRSKSRYGN  180
YEIVELSVED LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI NPTSRDKTVE  240
YSSLMRHYYS CPQQGCRWNQ RHEKFQPLKS VICAKNHYKR SHCPKIYMCR RCNVKHFSVL  300
SDLRTHEKHC GDIKWVCSCG TRFSRKDKLM SHVSLFSGHS PAHEPSQQQP PMITP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444949.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-178STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3N6QGJ30.0A0A3N6QGJ3_BRACR; Uncharacterized protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-172C2H2 family protein