PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 214aa MW: 23949.6 Da PI: 9.4964

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1763_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.7e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ RrC1763_p1 10 FIANDSSRKATFKKRKKGLIKKVNELSTLCGINACAIIYSPY 51 899*************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.058	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-24	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.63E-24	2	85	No hit	No description
SuperFamily	SSF55455	1.28E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-18	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTRKKVKLAF IANDSSRKAT FKKRKKGLIK KVNELSTLCG INACAIIYSP YDTNPEVWPS 60 NSGVQRIISD FRKLPEMDQN KKMVDQETFL RQRIAKASDN LKKQRKDNRE MEMTEVMFQC 120 LVGNMGMFNL NIMDLNDLGY MIDQYLKDVS RRIEILGSSG GMELGESSNA AAASPSETLE 180 RWLLCRQQPL HSASSSSAAA AAVSSSCSST CWTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFIANDSSRKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454705.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	2e-95	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A078J738	1e-108	A0A078J738_BRANA; BnaAnng16690D protein
TrEMBL	A0A0D3E8D3	1e-108	A0A0D3E8D3_BRAOL; Uncharacterized protein
TrEMBL	A0A397XW25	1e-108	A0A397XW25_BRACM; Uncharacterized protein
TrEMBL	A0A3N6QGB6	1e-108	A0A3N6QGB6_BRACR; Uncharacterized protein
TrEMBL	A0A3P6E9T6	1e-108	A0A3P6E9T6_BRAOL; Uncharacterized protein
TrEMBL	M4EL02	1e-108	M4EL02_BRARP; Uncharacterized protein
STRING	Bra029469.1-P	1e-109	(Brassica rapa)
STRING	Bo9g078450.1	1e-109	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-90	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]