PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC17622_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 222aa MW: 25312.8 Da PI: 9.2135

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17622_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.2e-08	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg WT+eEd lv +++++G ++W + +++ g RrC17622_p1 14 RGEWTAEEDRMLVAYINKYGVRDWGALPKRAG 45 89***********************9999887 PP
2	Myb_DNA-binding	54.3	3.1e-17	45	88	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ RrC17622_p1 45 GKFTAQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 88 79*****************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-19	11	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-9	12	45	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-17	13	91	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-10	16	86	No hit	No description
PROSITE profile	PS51294	20.848	39	93	IPR017930	Myb domain
Pfam	PF00249	8.1E-16	45	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-20	46	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGRTTWFDVD GIKRGEWTAE EDRMLVAYIN KYGVRDWGAL PKRAGKFTAQ EEEDIIKFHS 60 LLGNRWAAIA KQMPNRTDND IKNHWNSCLK KRLRRSGIDP MTHGPIKTTS STRSSPARRH 120 SSSTSSFSLS STGSVRLLNK LAAGISSRKF GLDRIKTVMI SSEPRQVDDE EKVMIGSKKE 180 EERVIGCFME IDKNLISTMS LDELPCDSSY YYCDDWLRGC FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-17	14	93	7	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468444.1	1e-148	PREDICTED: transcription factor MYB34-like
TrEMBL	A0A078HV83	1e-133	A0A078HV83_BRANA; BnaC02g22880D protein
TrEMBL	A0A0D3AQH4	1e-133	A0A0D3AQH4_BRAOL; Uncharacterized protein
STRING	Bo2g081100.1	1e-134	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74430.1	1e-82	myb domain protein 95