PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 396aa MW: 44089.3 Da PI: 4.5361

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17562_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.3	1.1e-47	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtd elv +yLk+kv gkkl + ++i+e+diyk+eP+dLp k +k+++ +w+fF++r+kky+tg r+nrat+ gyWk+tgk+++vl+ + RrC17562_p1 6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAELDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYSTGVRANRATACGYWKTTGKERDVLC-N 101 579**********************999.89**********96347778888**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ge+ g ktLv++ g++p+ge+tdWvmheyrle RrC17562_p1 102 GEVAGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-56	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	52.059	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYKFEPSD LPDKSYIKSG 60 DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR 120 GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP YKDEDWSDEE 180 QHTDVPATNA PAILQGETSL AVAHVPNKDS FVGMIAESCV SDFLQATTTA SDLPQLNDAA 240 NTPLSAAPLL DSNSIASLAP PTLEAPNNCD DIYSMLHLFV DEDEYFRFSE FNNTEMRHDP 300 NVSAPICLGE GDIFSELPDF SNMQHISMPR TPSYDLIENS ELYLDLQDLT APLAPPQIGN 360 ASDSYLSHQG QFDFSTAAND EDPYGFSASM GQGPDI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE LDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKERDVLC NGEVAGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP YKDEDWSDEE  180
QHTDVPATNA PAILQGETSL AVAHVPNKDS FVGMIAESCV SDFLQATTTA SDLPQLNDAA  240
NTPLSAAPLL DSNSIASLAP PTLEAPNNCD DIYSMLHLFV DEDEYFRFSE FNNTEMRHDP  300
NVSAPICLGE GDIFSELPDF SNMQHISMPR TPSYDLIENS ELYLDLQDLT APLAPPQIGN  360
ASDSYLSHQG QFDFSTAAND EDPYGFSASM GQGPDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-43	6	156	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966758	1e-175	KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470726.1	0.0	PREDICTED: NAC domain-containing protein 82-like
Swissprot	Q9FY82	0.0	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A398A858	0.0	A0A398A858_BRACM; Uncharacterized protein
TrEMBL	A0A3P6ABT9	0.0	A0A3P6ABT9_BRACM; Uncharacterized protein
TrEMBL	M4EIM5	0.0	M4EIM5_BRARP; Uncharacterized protein
STRING	Bra028640.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3692	25	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	1e-171	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]