 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC1752_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 289aa MW: 32533.5 Da PI: 8.0951 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC1752_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00016 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ C ksF + L H+r+H
RrC1752_p2 4 YKCKFCFKSFVNGRALGGHMRSH 26
9*********************9 PP
|
| 2 | zf-C2H2 | 16.1 | 3.2e-05 | 181 | 203 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ Cgk+F++ L H +H
RrC1752_p2 181 YTCETCGKVFKSYQALGGHRASH 203
9************9999998887 PP
|
| 3 | zf-C2H2 | 11.9 | 0.00067 | 227 | 249 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C ++F++ L H r+H
RrC1752_p2 227 HECPICLRVFTSGQALGGHKRSH 249
79******************999 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 7.7E-10 | 3 | 26 | No hit | No description |
| SMART | SM00355 | 0.016 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.138 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 4.1E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 172 | 206 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 7.7E-10 | 176 | 203 | No hit | No description |
| SMART | SM00355 | 0.011 | 181 | 203 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 4.3E-11 | 181 | 205 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.24 | 181 | 208 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.14 | 227 | 249 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 3.9E-12 | 227 | 249 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.203 | 227 | 249 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 229 | 249 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSLQEEEE RPSQLSIESK SNVSSSSSEE 60
GGEISGLREE KHRTMDDGSE TESSRNIVNL TRKRSKRTRK LDSFSSKKMM KTSQLGYEPE 120
AEAPHSSASD TTTEEDLAFC LMMLSRDKWK KNKVSSHEEV VEEIDVEASE GYKIHTTKGR 180
YTCETCGKVF KSYQALGGHR ASHKKNRVSN KTEYDAVVVA APEKRIHECP ICLRVFTSGQ 240
ALGGHKRSHG LGNLSVNHQV DRTESVKQRI IDLNLPAPTE EDEVSVVFQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189319 | 0.0 | AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence. |
