PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 380aa MW: 42462.6 Da PI: 6.0313

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1749_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.3e-34	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG ekAtPkti+++m+++gLtl+h+kSHLQkYRl RrC1749_p4 28 KPRLKWTPDLHERFVEAVNQLGGGEKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.727	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	26	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	27	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-11	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-24	129	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MPIPTERHPF LRGNGPGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GEKATPKTIM 60 KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENTPEA DESQSESLSI 120 GPQPSMNLPI SDALKMQIAV QRRLHEQLEV QRHLQLRIEA QGKYLQAILE KAQETLGRQN 180 LGPAGIEATK AQLSELVSKV SSEYPDASFL ELQNLHHQQM QTAYPPPNSS LESCLTSSEG 240 TQKAAPKMLE NRLGLRTYLG DSTSEQKELM EEPFFQRMEL TWAEEEEEGI RENSRPYLST 300 MEPRSSSSRR SPGRLSIGVG LQEHIGGSSN KGYTEERFNE SGEDCKVETR ARTALDLNTH 360 DETYGTARPK QFDLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MPIPTERHPF LRGNGPGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GEKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENTPEA DESQSESLSI  120
GPQPSMNLPI SDALKMQIAV QRRLHEQLEV QRHLQLRIEA QGKYLQAILE KAQETLGRQN  180
LGPAGIEATK AQLSELVSKV SSEYPDASFL ELQNLHHQQM QTAYPPPNSS LESCLTSSEG  240
TQKAAPKMLE NRLGLRTYLG DSTSEQKELM EEPFFQRMEL TWAEEEEEGI RENSRPYLST  300
MEPRSSSSRR SPGRLSIGVG LQEHIGGSSN KGYTEERFNE SGEDCKVETR ARTALDLNTH  360
DETYGTARPK QFDLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-22	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-22	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-22	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-22	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-22	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY042878	0.0	AY042878.1 Arabidopsis thaliana transfactor-like protein (MRG7.19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443809.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Refseq	XP_018443810.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A397XTD7	0.0	A0A397XTD7_BRACM; Uncharacterized protein
STRING	Bra002145.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]