PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1746_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 222aa    MW: 24630 Da    PI: 8.1841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1746_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06194216223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++ +L +Hi + H
  RrC1746_p4 194 VCPKCSRGFRDPVDLLKHIDKdH 216
                 7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.96E-13649No hitNo description
PROSITE profilePS510397.8371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-111150IPR000058Zinc finger, AN1-type
PfamPF014282.1E-141349IPR000058Zinc finger, AN1-type
SMARTSM001543.9E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.6E-1092148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.06E-1095149No hitNo description
PROSITE profilePS510397.999100147IPR000058Zinc finger, AN1-type
PfamPF014287.2E-8103143IPR000058Zinc finger, AN1-type
SMARTSM001540.02103144IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.933193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDDCKQ IDFLPFTCDR CTQVFCLDHR SYMKHNCPKG NRGDVTVVIC  60
PLCSKGVRLN PDEDPNITWE KHVNFDCDPS SHEQTVKKKK NKCPVPRCRE LLTFSNTIRC  120
RDCSVEHCLK HRFGPDHGCA GPKKPESRWS SLLASAEAGI SRLGTDLSQK LQFASGGNGE  180
GNGKQSCGKV TVDVCPKCSR GFRDPVDLLK HIDKDHQGTS KA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894570.0AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546911.11e-141zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
SwissprotQ9SCM41e-135SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A397Y8R71e-139A0A397Y8R7_BRACM; Uncharacterized protein
STRINGBo8g091910.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-138C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]