PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1743_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 149aa    MW: 16577.8 Da    PI: 10.8781
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1743_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70288.51.6e-2767136477
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkre 77 
                  ++ C dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++  +      +++ss+++++ + ++s+++++
  RrC1743_p4  67 EEKVCTDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAASRS----SSSSSDRNKKLKLHSSDKPKS 136
                 6789**************************************9876543....233333334444444555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-2369120IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.9E-2770111IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MATAASTFTI INSFLRRRRR LHHYMLGLRN TIFLPQPPSQ VTQPSPSPVN FAAVEESNKS  60
SRNSNVEEKV CTDCGNRAKK ECLFERCRTC CKSRGYNCAT HVKSTWVPSS AASRSSSSSS  120
DRNKKLKLHS SDKPKSVLIV PTTTSRQGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420LRRRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486811.13e-70PREDICTED: protein SHI RELATED SEQUENCE 6-like
SwissprotQ9M2U49e-46SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLA0A397YB201e-67A0A397YB20_BRACM; Uncharacterized protein
STRINGBra007072.1-P2e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.12e-38SHI-related sequence 6
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]