PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1741_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 426aa MW: 44935.3 Da PI: 4.0748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1741_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H RrC1741_p1 215 FTCPLCKKGFPTSQALGGHQNAH 237 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.74E-6	212	243	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.3E-4	213	242	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.9E-6	215	239	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.468	215	242	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	217	237	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MENQVMSASS SSVAPPKTCN DEIIVAVDES IEKATESQVA SSVSSSAPAS QPEKCNDVSV 60 AVEESPMEKA TENQAVSSAC SSAPSPQPEK SNDVTMAVEE ANKEMVATEN QVVSSGGSSA 120 PQPANDGVIV AVEEATEVVA TTENQIVPYE SSPAPPQGTD IIVAVEESRE METDNNNPGL 180 GSALVVTENP SPGSGAVPTG NQITYLYPSR SNKIFTCPLC KKGFPTSQAL GGHQNAHKQE 240 REWEKKRKDM EQEYPGYSFL NSKIDNPLLF FLGGYSSEAL SNDNHLGIPL EAFKRRFTGN 300 YPSSSNRFSD PNIAVVPRMA PPTSFFPGNA ASTNGSSSGG LGGPTPLYSN YPPMIPRNAP 360 PFPPPQTTNL PSGMYPQGNV LNEVNFISEI GRGNIVEIDD DDADADGGGV EPEEGPSKSW 420 GADLSL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MENQVMSASS SSVAPPKTCN DEIIVAVDES IEKATESQVA SSVSSSAPAS QPEKCNDVSV  60
AVEESPMEKA TENQAVSSAC SSAPSPQPEK SNDVTMAVEE ANKEMVATEN QVVSSGGSSA  120
PQPANDGVIV AVEEATEVVA TTENQIVPYE SSPAPPQGTD IIVAVEESRE METDNNNPGL  180
GSALVVTENP SPGSGAVPTG NQITYLYPSR SNKIFTCPLC KKGFPTSQAL GGHQNAHKQE  240
REWEKKRKDM EQEYPGYSFL NSKIDNPLLF FLGGYSSEAL SNDNHLGIPL EAFKRRFTGN  300
YPSSSNRFSD PNIAVVPRMA PPTSFFPGNA ASTNGSSSGG LGGPTPLYSN YPPMIPRNAP  360
PFPPPQTTNL PSGMYPQGNV LNEVNFISEI GRGNIVEIDD DDADADGGGV EPEEGPSKSW  420
GADLSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454056.1	0.0	PREDICTED: uncharacterized protein LOC108825235
TrEMBL	A0A078G4V7	1e-160	A0A078G4V7_BRANA; BnaA09g03910D protein
STRING	Bra036609.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	6e-61	C2H2 family protein