PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 188aa MW: 21576.5 Da PI: 8.1876

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17403_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	75	130	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk ++tkeql Le+ F+++ +++ +++ +L+k+l L+ +q+ vWFqNrRa++k RrC17403_p1 75 KRKNKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELCLQPSQIAVWFQNRRARWK 130 688889*************************************************9 PP
2	HD-ZIP_I/II	78.8	8.7e-26	76	136	1	61
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 +k ++l+keq+++LE+sF+e+ kL+++rK +l++eL lqp q+avWFqnrRAR+k +l + RrC17403_p1 76 RKNKKLTKEQLASLEQSFQEDIKLDSDRKLKLSKELCLQPSQIAVWFQNRRARWKVMKLRV 136 5899***************************************************988754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-19	62	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-18	62	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	72	132	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	75	130	IPR001356	Homeobox domain
CDD	cd00086	2.14E-16	75	133	No hit	No description
SMART	SM00389	1.3E-15	75	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEWSMTSNVE NMRDAFLPVP CLESNSLRSF FNYDPSAGNS YTPALTQATP VICVPESENV 60 TNEYSCPSNN DGTMKRKNKK LTKEQLASLE QSFQEDIKLD SDRKLKLSKE LCLQPSQIAV 120 WFQNRRARWK VMKLRVIILK HNLMKMQSTL NNNQIEGGSQ SYGTDQYSNP MFVASTCFPP 180 ISQQDYPW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022567767.1	6e-83	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	9e-62	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A3N6RH09	2e-92	A0A3N6RH09_BRACR; Uncharacterized protein
STRING	Bo9g181710.1	2e-78	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-52	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]