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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17361_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25289.6 Da PI: 8.8384 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.2e-19 | 62 | 116 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k RrC17361_p1 62 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 116 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.7e-40 | 62 | 151 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l RrC17361_p1 62 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 151 69*************************************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.491 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 60 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-18 | 60 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.30E-15 | 62 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-18 | 62 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-16 | 62 | 116 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-23 | 118 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.8E-9 | 118 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MTVVAGGDLL CRQTSSHSGV SSFSTGRVVK RERDGGEESR EEEETTEKVM SDYHEDEGVS 60 ARKKLRLTKE QSALLEESFK HHSTLNPKQK QDLARQLNLR PRQVEVWFQN RRARTKLKQT 120 EVDCEFLKKC CETLTDENIR LQKEIQELKT LKLTHQPFYM HMPVSTLTMC PSCERIGGRS 180 GGDTGGEGVG GGSSVATTVR RRELSPSRQS LTSSTLVPVP LQLVK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441253 | 0.0 | AJ441253.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT9. | |||
GenBank | AK229218 | 0.0 | AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10. | |||
GenBank | ATU09341 | 0.0 | U09341.1 Arabidopsis thaliana clone HAT9 homeobox protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478351.1 | 1e-144 | PREDICTED: homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46603 | 3e-94 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A1J3F7W8 | 1e-107 | A0A1J3F7W8_NOCCA; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A1J3HM02 | 1e-107 | A0A1J3HM02_NOCCA; Homeobox-leucine zipper protein HAT9 | ||||
STRING | Bo4g151080.1 | 1e-104 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 5e-87 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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