PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1724_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 453aa    MW: 49655 Da    PI: 7.9372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1724_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30108166160
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   ++vv+++Y geH+h+k
  RrC1724_p6 108 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQVVDTVYFGEHDHPK 166
                 58****************************************.***************85 PP
2WRKY106.41.5e-33278336159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  RrC1724_p6 278 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKMLIMTYEGNHDHD 336
                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355103167IPR003657WRKY domain
SuperFamilySSF1182901.02E-24104167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-26104167IPR003657WRKY domain
SMARTSM007741.7E-34108166IPR003657WRKY domain
PfamPF031069.2E-24109165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-34264338IPR003657WRKY domain
SuperFamilySSF1182901.96E-28272338IPR003657WRKY domain
PROSITE profilePS5081134.452273338IPR003657WRKY domain
SMARTSM007744.2E-38278337IPR003657WRKY domain
PfamPF031062.1E-26279335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAEVGKVLVS DNNSSEAKAS DAVVVASTDK TEAKPVATVT RTETEQCSSA EIPESTDNKK  60
LVPASVSEEE EVVVASEKAT KAPESGTVLS LQSGSEGSSS PFIREKVMED GYNWRKYGQK  120
LVKGNEFVRS YYRCTHPNCK AKKQLERSPG GQVVDTVYFG EHDHPKPLGG AASVSINQNR  180
RSDVLTAVSK EKSSGSSSVQ THEPPKVHGG LHLSVVPMAD EVKTAVSPSS RITTPKDNIS  240
PASKRRKKGG GSIEHIPMER PNSESRNVVH TQTLFDIVND GYRWRKYGQK SVKGSPYPRS  300
YYRCSSSGCP VKKHVERSSH DTKMLIMTYE GNHDHDMPPG RIVTHNNTLD SEEVDDDKEP  360
SASKDTQVNK TPQSSAERLE HHHSKKKAKT NGLEKSLAED PVLDAKPKEE TKERSDEAAK  420
TKSDDKTTTV CHEKTSRTVE SEEQKPKAES GQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-46107340176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123890.0EU912389.1 Brassica napus WRKY1-1 transcription factor (WRKY1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491223.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A398A3Y40.0A0A398A3Y4_BRACM; Uncharacterized protein
STRINGBra013187.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-161zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]