PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17002_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 234aa    MW: 26476.9 Da    PI: 9.1767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17002_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.21.9e-41141241128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLk+kv +++l++ ++i++vd+++++PwdLp                  ky++g+r+nrat+sgyWkatg dk+v+++ ++
  RrC17002_p1  14 LPPGFRFHPTDEELVVQYLKRKVFSSPLPA-SIIPDVDVCRADPWDLP-----------------AKYPNGNRSNRATESGYWKATGIDKRVVTSrGN 93 
                  79****************************.89**************9.................479*********************999988577 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vglkktLvfykg+ p+g++tdW+mheyrl
  RrC17002_p1  94 QIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 124
                  77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5410146IPR003441NAC domain
PROSITE profilePS5100545.90114146IPR003441NAC domain
PfamPF023651.5E-2315124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDKINLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSSP LPASIIPDVD VCRADPWDLP  60
AKYPNGNRSN RATESGYWKA TGIDKRVVTS RGNQIVGLKK TLVFYKGKPP HGSRTDWIMH  120
EYRLSSSPPS SIGPTQNWVL CRIFLKKRAG DKNEDEGDNR NLRCNNDQLE IITPNQTEDK  180
TEPIFFDFMR KERTTDLNLL PSSPSSGHAL SGVTTEIFSS DEETSSCNSL RRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-431215215171NO APICAL MERISTEM PROTEIN
1ut4_B3e-431215215171NO APICAL MERISTEM PROTEIN
1ut7_A3e-431215215171NO APICAL MERISTEM PROTEIN
1ut7_B3e-431215215171NO APICAL MERISTEM PROTEIN
3swm_A3e-431215218174NAC domain-containing protein 19
3swm_B3e-431215218174NAC domain-containing protein 19
3swm_C3e-431215218174NAC domain-containing protein 19
3swm_D3e-431215218174NAC domain-containing protein 19
3swp_A3e-431215218174NAC domain-containing protein 19
3swp_B3e-431215218174NAC domain-containing protein 19
3swp_C3e-431215218174NAC domain-containing protein 19
3swp_D3e-431215218174NAC domain-containing protein 19
4dul_A3e-431215215171NAC domain-containing protein 19
4dul_B3e-431215215171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528171e-176AK352817.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472969.11e-151PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-129NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D3B0X11e-145A0A0D3B0X1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A9P01e-145A0A3P6A9P0_BRAOL; Uncharacterized protein
STRINGBo3g009040.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-131NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]