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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC168_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 442aa MW: 48849.3 Da PI: 9.2642 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45 | 2.4e-14 | 330 | 385 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L +k++e ++k+ +++ RrC168_p3 330 RRQKRMIKNRESAARSRARKQAYTLELEAEIAQLKELNEELhRKQVEIIEKQKQQV 385 69**************************************9556666667766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-14 | 326 | 391 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.254 | 328 | 373 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 330 | 385 | No hit | No description |
SuperFamily | SSF57959 | 3.69E-10 | 330 | 374 | No hit | No description |
Pfam | PF00170 | 3.2E-12 | 330 | 387 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.83E-24 | 330 | 384 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 333 | 348 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MGSRMNFVDV VRNEVFNAKQ PTLGTGLPLT RQNSVFSLTF DEFQNSWGGG GAGIGKDFGS 60 MNMDELLKNI WTAEESHSMM NSGDNNGGLS VSVGGGLQRQ GSINLPRTIS QKRVDDVWKE 120 LMREEDETGG ASGIPQRQQT LGEMTLEEFL LKAGVVREEP QQQVERIDNF DGGLYGFGSN 180 AGLGSAPNGF GPNQAYGATV RPNLLTTQTQ PLQMLQPQKV HQPQQLIPKQ DGPYPKQTTM 240 AFSNNRSQPP TQCQEVKPSI VGVQDRPMNN NLLQAVDFKR GVTVAAVSPG SQMSPDLTPK 300 RNMDASLSPV PYMFGRTRKT GAVLEKVIER RQKRMIKNRE SAARSRARKQ AYTLELEAEI 360 AQLKELNEEL HRKQVEIIEK QKQQVLSLVF LTPGANAPAM GMQKAMPTKD IDRSLVESLI 420 AEGTQQRAEV IEQHRKIEAS FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX122893 | 1e-153 | JX122893.1 Brassica napus ABA-responsive element binding factor 3 (ABF3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483648.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
Refseq | XP_018483649.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
Swissprot | Q9M7Q3 | 0.0 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A0A3P6F956 | 0.0 | A0A3P6F956_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_006412286.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.3 | 1e-162 | abscisic acid responsive elements-binding factor 3 |