PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16853_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 418aa    MW: 45664.8 Da    PI: 6.6137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16853_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.7e-114570126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C++f+rtG C yG++C+++H+
  RrC16853_p1 45 PGERDCHYFLRTGKCGYGSSCRYNHP 70
                 5789*********************9 PP
2zf-CCCH36.48.5e-1291115327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tG CkyG+ Ck++H++
  RrC16853_p1  91 QPDCEYFLKTGACKYGSACKYHHPK 115
                  789********************96 PP
3zf-CCCH309.1e-10136159326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++ C+++++ G C++G  CkF+H+
  RrC16853_p1 136 EKSCPYYMQKGMCRFGVACKFHHP 159
                  567********************9 PP
4zf-CCCH40.54.5e-13239263327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+ff+++GtCkyGd+Ck++H++
  RrC16853_p1 239 RAECSFFMKNGTCKYGDNCKYSHPK 263
                  799********************96 PP
5zf-CCCH35.12.3e-11280305126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C +f ++G+CkyG++CkF H+
  RrC16853_p1 280 PGQPACGNFKAYGFCKYGASCKFDHP 305
                  57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-54471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874472IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-64772IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45070IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.95388116IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-494114IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911133161IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6135163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408236264IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8237263IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10239263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7239265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6242264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5277305IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145279307IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4285304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSETQQVQNS TESIPSSDKT EDTLTKVKVN EENKDEPSLL YPDRPGERDC HYFLRTGKCG  60
YGSSCRYNHP VSHVPEAVFY HREDLPERIG QPDCEYFLKT GACKYGSACK YHHPKDRNGA  120
GPVLFNALGY PIRKGEKSCP YYMQKGMCRF GVACKFHHPT QTHNVQPTSF PSVGIPYAGG  180
LPLMSLPPAT YEAMARPQAP HPQAYLSLMV APPQGWSTYM GGSNSIYDVK IKIDSSSERA  240
ECSFFMKNGT CKYGDNCKYS HPKERMLPNL FNPLVLPARP GQPACGNFKA YGFCKYGASC  300
KFDHPVPVNP GLTMPSLPTA YAPPVSTQVR ITPPPGRSDS TTVSAGDEPA AENKSSETDK  360
QDHGPDKSEV QDSSQLSHSD SAALSNEAEN PSPEAKKEDD DPSPADTSGK QGSSDNDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478283.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A397ZR980.0A0A397ZR98_BRACM; Uncharacterized protein
TrEMBLM4DZ700.0M4DZ70_BRARP; Uncharacterized protein
STRINGBra021817.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2