PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16674_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 303aa    MW: 32370.6 Da    PI: 6.168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16674_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09149193554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  RrC16674_p2 149 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 193
                  99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-14142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MASNNNNNPH DNLSDQTPSD DFFEQILGLP NFSASSSDGG LGGGGAPPMM LQLGSGEEGG  60
HMGGLGGGSG PTGFHNQMFP LGLSLEQGKG PGFLRPEAGL GTGKRFSDDV MKPVFHGQPM  120
QQPAPPAPHQ PTSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPTVNKTDRA  180
AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDMPL SSSVEDETSD GGRVPQPAWE  240
KWSNDGTERQ VAKLMEENVG AAMQLLQSKA LCMMPISLAM AIYHSQPPDT SSVVKPETNP  300
PPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396471.10.0transcription factor UNE12
RefseqXP_006396472.10.0transcription factor UNE12
SwissprotO227681e-175UNE12_ARATH; Transcription factor UNE12
TrEMBLV4L2M50.0V4L2M5_EUTSA; Uncharacterized protein
STRINGXP_006396471.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-147bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]