PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1666_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 121aa    MW: 13656.6 Da    PI: 10.4041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1666_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.87.1e-075783430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                +h+ +Er RR++i +++ +L+ l+P +
  RrC1666_p1 57 SHSLAERARREKISERMRTLQNLVPGC 83
                8************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-95188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.04553105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-85685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-45783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MFRNGVVTDR NEGVEVRKSK KPRNGSSSDV KEKRVSEQEP PKDYIHVRAR RGQATDSHSL  60
AERARREKIS ERMRTLQNLV PGCDKFLSMK LASISPVAYD FGSDLDGIIV RPEVLHLLIP  120
G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283505e-52AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankAY0575495e-52AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBankAY0876025e-52AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBankAY1130595e-52AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625360.18e-60PREDICTED: transcription factor bHLH137
RefseqXP_013625365.18e-60PREDICTED: transcription factor bHLH137-like
SwissprotQ93W882e-43BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0D3B4231e-58A0A0D3B423_BRAOL; Uncharacterized protein
STRINGBo3g024010.12e-59(Brassica oleracea)
STRINGBo3g024020.12e-59(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]