PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1660_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 797aa    MW: 88999 Da    PI: 4.5647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1660_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011438459122
                 EEETTTTEEESSHHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                 y+C++C+ ++ ++s +++H++ 
  RrC1660_p4 438 YVCGICNVVCAHPSVYESHLKG 459
                 9******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10109.7E-1115155IPR029060PIN domain-like
PfamPF019362.7E-2719154IPR021139NYN domain, limkain-b1-type
CDDcd109101.23E-6419162No hitNo description
SuperFamilySSF576675.8E-9425469No hitNo description
SMARTSM004510.0012435469IPR003604Zinc finger, U1-type
PfamPF128743.0E-8438462No hitNo description
SMARTSM003550.39438462IPR015880Zinc finger, C2H2-like
SMARTSM004510.13752786IPR003604Zinc finger, U1-type
SMARTSM003552.4755779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-6755785No hitNo description
PfamPF128740.0029757779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MCFDSITTHT AEAEYATAKT SVWWDIENCT VPKGWEAHTI SQKLNSALVN LNYRGPLSIY  60
AYGNTDLIPK PVQQALSSSG ISLNHVPSGK KDASDKKILV DMLLWVLENP APANLMLISG  120
DGDFSYALNR LRMRRYNILL AHPLQASPFL VASARTSWMW KSLIASGCPS ARSCCCCCSS  180
GSETSSQDVS VSVSEHVLST QAMDLGSGGT SKAARKKLRR ILRELNQQET KSMETQKKFG  240
EPENIAAAAS SGCHEQETEI ENKVVEAGVE MVALCGSPSV ALVDAKDIED IVQDNEMKSQ  300
DAQESIKCLE KENKELMEAI TTSESCEREF WQDFKERLDK NGVAPPLSVH HVFSELSRDF  360
HVPKEVRECF EAILKKLEPT QNDIEIEKLE SMLKQGLEIE SAEPENNSPA EPTENLEGDM  420
TKKMEKKSTV VEGKYEPYVC GICNVVCAHP SVYESHLKGR KHVAKFKKHT EALLDGQQIQ  480
QEEIIRDNGL PRDMTKELQI KPVEAPENMD YLDDQREELG ERCGTSERSL EEFFQTTEEV  540
GENDYKPLPN AECIFTGLTP EFSASEESRD GIDAIFKEPE VSQDANLSQE FESMPNGNLE  600
MNTGDPESTT EHPEEYMDMG MKKEKVTKDK AELKAYVLFD DKKIVEQSLE EKEHPRDALE  660
ELQFVPKDAQ TSVKEVTQIS KARVDNKDNE QILSVEFAEP KEASRERFDS IVKRLDLFME  720
KTSKQTLVES ENAAEGVEEV VGTGKENGAA AALVRVCDWC NVVCNTQMDF DSHVAGEKHA  780
ATLRKHVPLV KNEVAVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486937.10.0PREDICTED: uncharacterized protein LOC108857448 isoform X1
TrEMBLA0A0D3DDI90.0A0A0D3DDI9_BRAOL; Uncharacterized protein
STRINGBo7g098400.10.0(Brassica oleracea)