PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 30607.8 Da PI: 8.9493

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC16353_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.6	3.7e-17	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k RrC16353_p1 122 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 176 778899***********************************************98 PP
2	HD-ZIP_I/II	119.4	2e-38	122	211	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL ke ++L+ +l RrC16353_p1 122 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLLKELQDLK-AL 211 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00221	0	38	46	IPR022357	Major intrinsic protein, conserved site
PROSITE profile	PS50071	16.536	118	178	IPR001356	Homeobox domain
SMART	SM00389	4.2E-14	120	182	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-17	120	186	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-14	122	176	IPR001356	Homeobox domain
CDD	cd00086	6.78E-15	122	179	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-16	122	176	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	153	176	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.2E-9	178	212	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.1E-24	178	221	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006810	Biological Process	transport
GO:0016020	Cellular Component	membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005215	Molecular Function	transporter activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLDDSCNTG LVLGLGFSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEMTVSR 60 AGDQIYGQTS SHSGISSFSS GRIKREREVC GDGEEEAEET AKRVVCSRVR DDHENEEGVS 120 ARKKLRLNKQ QSALLEDSFK LHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCEFLKKC CETLTDENRR LLKELQDLKA LKMSQPFYMH MPPATLMMCP SCERLGGGGA 240 GGGGGSTVAV DGGTAKGAFS IVTKPRIYSP FMKPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447881.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-146	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A3P6BBV5	1e-166	A0A3P6BBV5_BRAOL; Uncharacterized protein
STRING	Bra010612.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-135	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]