PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16353_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30607.8 Da    PI: 8.9493
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16353_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-17122176256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  RrC16353_p1 122 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 176
                  778899***********************************************98 PP
2HD-ZIP_I/II119.42e-38122211191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL ke ++L+ +l
  RrC16353_p1 122 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLLKELQDLK-AL 211
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0022103846IPR022357Major intrinsic protein, conserved site
PROSITE profilePS5007116.536118178IPR001356Homeobox domain
SMARTSM003894.2E-14120182IPR001356Homeobox domain
SuperFamilySSF466891.03E-17120186IPR009057Homeodomain-like
PfamPF000461.4E-14122176IPR001356Homeobox domain
CDDcd000866.78E-15122179No hitNo description
Gene3DG3DSA:1.10.10.607.1E-16122176IPR009057Homeodomain-like
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021831.2E-9178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGFSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEMTVSR  60
AGDQIYGQTS SHSGISSFSS GRIKREREVC GDGEEEAEET AKRVVCSRVR DDHENEEGVS  120
ARKKLRLNKQ QSALLEDSFK LHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT  180
EVDCEFLKKC CETLTDENRR LLKELQDLKA LKMSQPFYMH MPPATLMMCP SCERLGGGGA  240
GGGGGSTVAV DGGTAKGAFS IVTKPRIYSP FMKPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447881.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-146HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3P6BBV51e-166A0A3P6BBV5_BRAOL; Uncharacterized protein
STRINGBra010612.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-135HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]