PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16149_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 116aa    MW: 13363.2 Da    PI: 9.1078
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16149_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.34.4e-37151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F++g++ell++i+
   RrC16149_p1  15 FLSKTYQLVDDQITDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDNFRRGQEELLSEIR 102
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
   RrC16149_p1 103 RRKS 106
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-39798IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3315104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MTAVMAAHRT VPAPFLSKTY QLVDDQITDD VVSWNEDGTA FVVWKTAEFA KDLLPQYFKH  60
NNFSSFIRQL NTYGFRKTVP DKWEFANDNF RRGQEELLSE IRRRKSVIAA AGKCAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-28510911125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472168.16e-82PREDICTED: heat stress transcription factor B-1
SwissprotQ963207e-71HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLA0A1J3CWP52e-74A0A1J3CWP5_NOCCA; Heat stress transcription factor B-1
TrEMBLA0A1J3G6V42e-74A0A1J3G6V4_NOCCA; Heat stress transcription factor B-1
TrEMBLA0A1J3JZ932e-74A0A1J3JZ93_NOCCA; Heat stress transcription factor B-1
TrEMBLA0A3P5ZH612e-74A0A3P5ZH61_BRACM; Uncharacterized protein
STRINGBra011735.1-P2e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-73heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]