PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15994_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 266aa    MW: 30373.7 Da    PI: 6.1175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15994_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.94e-23661942128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevls 94 
                  ppG rF Ptd   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r     g+Wk+t  ++++++
  RrC15994_p1  66 PPGSRFLPTDLGCVRVHLRNKVDKKKSG---FITTLDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGTWKTTTVKEAIKD 159
                  9************************955...5**************8.3333233445********999875367888977779************** PP

          NAM  95 kkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  k++++ g  ++Lv+ k   + + + t W m+ey l
  RrC15994_p1 160 KNEKVEGYIQSLVYNKTnVNGEIKPTGWNMKEYCL 194
                  **************96524556678********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-2858207IPR003441NAC domain
PROSITE profilePS5100529.98565210IPR003441NAC domain
PfamPF023652.8E-1466194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIRDNDKPKV DDESSSKSDN SLLGRGDQEG IGSVSSTRGS KYFEEGMRHL QHTDDPNCTK  60
KAPVYPPGSR FLPTDLGCVR VHLRNKVDKK KSGFITTLDV YKDDPWLLDH VENDLFPRGE  120
WYYFTPRNKR GASSCSRTVR GRGGGGTWKT TTVKEAIKDK NEKVEGYIQS LVYNKTNVNG  180
EIKPTGWNMK EYCLHEKNED DLVLCHLKGN LEKKGFVEEV KKDNILPNHV QDHQEEEEEE  240
VGANRVEMRT LQEDDGDATQ QQQQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-115NAC domain-containing protein 6-like
TrEMBLM4CK451e-116M4CK45_BRARP; Uncharacterized protein
STRINGBra004579.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.14e-26NAC domain containing protein 6