PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15983_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 321aa    MW: 36113.5 Da    PI: 6.9337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15983_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.6e-12438190128
          NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++ +++++g+kktLv+y+grap+g  t Wvmheyrl
  RrC15983_p1  43 GQIKTGGDRAIGTKKTLVYYRGRAPDGIGTGWVMHEYRL 81 
                  3444447777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.6961105IPR003441NAC domain
PfamPF023653.2E-63681IPR003441NAC domain
SuperFamilySSF1019411.29E-1642105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MPPVSLPPGF SVNHGTCPST RQKVPQWFKN KPGNKRRLLE SNGQIKTGGD RAIGTKKTLV  60
YYRGRAPDGI GTGWVMHEYR LDETECEPTA FGMQDAYALC RVFKKIIIEA KPRLDQHQHQ  120
HYVNTRSNIS GNSSVDVCSD LEISSSTHVT HQVLPNYNNA TETQQGLETQ TQSVIVMTEY  180
MSQGMPTGFS SYVSPYGSYL TQPKANTEIE CGMLQRQMSL PPLRVENSRV QTSDFSNGMN  240
QNSGECGFED FTFAASNLNQ LYNNDVDDNI IHFGSLDEQF LNAGNTTWMR MSNENLKQVI  300
NKLYIISYLI SVNSSFIYSR L
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626928.11e-129PREDICTED: NAC domain-containing protein 86-like isoform X2
RefseqXP_013680579.11e-129NAC domain-containing protein 86 isoform X2
SwissprotQ9FFI51e-100NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0D3B1L31e-127A0A0D3B1L3_BRAOL; Uncharacterized protein
STRINGBo3g012450.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-102NAC domain containing protein 86
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]