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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC15975_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
ERF |
Protein Properties |
Length: 249aa MW: 27623.9 Da PI: 5.8311 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC15975_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 63.3 | 5e-20 | 82 | 131 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a++k++g
RrC15975_p1 82 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAESAALAYDEAALKFKG 131
7********.**********94....45************************988 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0050832 | Biological Process | defense response to fungus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MDPRFYGNMP FGGDEPEEDE NLFPFYSARS QHDMSVMVSA LSQVIGNQEN SSHDSPSVHN 60 PQDPSLPVAP THQDQGDLRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFETAESAAL 120 AYDEAALKFK GNKAKLNFPE RVQLGSNVIN NQLSNSTCYS SNQTETQNIP YYNQYYQDGS 180 NNDMLSFNLG GGYGSGNGVS MSHDHSLSTI TTAATTSSSS GGSSRQQEEQ DFARFWRFGD 240 SSSSPHSGY
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY560862 | 1e-88 | AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds. |
GenBank | BT031357 | 1e-88 | BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds. |