PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1575_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 340aa    MW: 39164.8 Da    PI: 5.9223
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1575_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.7e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ +++isws++++sf+v+++ ef+k++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+  l+++i+
    RrC1575_p2  14 FLTKTYEMVDDSSSDSVISWSDHNKSFIVKNPAEFSKDLLPRFFKHKNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFVRGQPYLMKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    RrC1575_p2 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDDNNGVSSS LPPFLTKTYE MVDDSSSDSV ISWSDHNKSF IVKNPAEFSK DLLPRFFKHK  60
NFSSFIRQLN TYGFRKIDPE KWEFANEDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQSPL  120
SDSERQSMKD QIERLKREKE VLLADLQSQE LERKGFELQV TALRDRLQHM EQRQRSIVTF  180
VSQVLEKPGL SLNLETHERR KRKLQETTSS LLPSRSHAEQ VEKLESSLTF LENLAMESCD  240
KSMDIDVNES TSFAESLSNG DNRPKSAKID MNAEPVTTIA AAPKTGVNDV FWEQCLTENP  300
GSIEQQEVQS ERRDVDANKI GDGRTFWWNA KNVNDIAERV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22910324129Heat shock factor protein 1
5d5v_B1e-22910324129Heat shock factor protein 1
5d5v_D1e-22910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203ERRKRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452172.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_018452173.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A397XX630.0A0A397XX63_BRACM; Uncharacterized protein
TrEMBLM4DM630.0M4DM63_BRARP; Uncharacterized protein
STRINGBra017595.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]