PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15743_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 143aa    MW: 16055.2 Da    PI: 5.7832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15743_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-0638781055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  RrC15743_p2 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 78
                 67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6422877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-102887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-123691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-63882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEYTRDSAGM MMENKRSVCS LEGNSIKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK  60
TDTASVLLEA MQYIQFLQEQ VKVLSAPYLQ TTSIATHDEE LEEYSLRSRG LCLVPMEYTV  120
GVAQTNGADI WAPVKTPNFQ SPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433644.14e-99PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU26e-80BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078HCK66e-88A0A078HCK6_BRANA; BnaC04g12910D protein
TrEMBLA0A3P6CBJ36e-88A0A3P6CBJ3_BRAOL; Uncharacterized protein
STRINGBo4g049510.11e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-82bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]