PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1570_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 1093aa    MW: 122661 Da    PI: 7.6457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1570_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12420465454
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  RrC1570_p1 420 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 465
                 799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4949239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.136416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-13419470No hitNo description
SuperFamilySSF474595.37E-18419483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10420465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17420479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.10.630.104.0E-1245971086IPR001128Cytochrome P450
SuperFamilySSF482641.31E-1216131086IPR001128Cytochrome P450
PfamPF000671.1E-926131062IPR001128Cytochrome P450
PRINTSPR004631.7E-31640659IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.7E-31664685IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.7E-31878895IPR002401Cytochrome P450, E-class, group I
PRINTSPR003855.2E-6889906IPR001128Cytochrome P450
PRINTSPR004631.7E-31898924IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.7E-31941959IPR002401Cytochrome P450, E-class, group I
PRINTSPR003855.2E-6942953IPR001128Cytochrome P450
PRINTSPR004631.7E-3110241034IPR002401Cytochrome P450, E-class, group I
PRINTSPR003855.2E-610251034IPR001128Cytochrome P450
PROSITE patternPS00086010271036IPR017972Cytochrome P450, conserved site
PRINTSPR004631.7E-3110341057IPR002401Cytochrome P450, E-class, group I
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051792Biological Processmedium-chain fatty acid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0080110Biological Processsporopollenin biosynthetic process
GO:0005506Molecular Functioniron ion binding
GO:0016709Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MSSNNNRVWN EDDKAIVASL LGKKALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVETP  60
NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGEK SEMMRMLSMG REEETHQTLR  120
KRVLQKLHAL FGGLDDEEDN CALVLDRVTD TEMFLLASMY FSFPRGQGGP GKCFHSSHPV  180
WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG STSCLPHSDD SISSIRSSFS  240
SPPPPPPPVR VVLPVVVADD NSSSKIFGKD LHTSPAFLHH HQQQQHNRQF REKLTVRKMD  300
DRVPKRLDGN RFMFSNPSTA PTWIPPRTNN NSVTAEAPSR EDFKFLPLQQ SSSSSHRLLP  360
PAQMQIDFSG ASSRASETHS DGGGGADWAD LVGGADESGG DNRPRKRGRR PANGRVEALN  420
HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAVS YINELYAKLK VMEAERERLG  480
YSSNPHLCLE QPGINVQTAG EDVAVTVSCP LDSHPASRIF HAFEEAKVEV INSKLEVPQD  540
LVLHTFVIKS EEVTKEKLIS ALSREQSSSV QSRTSSETKM ILVIVFSLLA ILFLNVLLWR  600
WLKASARNVQ ELPPGPPRWP ILGNLLQLGP LPHRDMAALC NKYGPLVYLR LGNVDAITTN  660
DPDTIREILF RQDDVFASRP KTLAAVHLAY GCGDVALAPM GPHWKRMRRI CMEHLLTTKR  720
LESFVAQRAE EAQYLVQDVC KRAECGKPIN LREVLGAFSM NNVTRMLLGK QFFGPGSVVG  780
AKEAQEFMHI THKLFRLLGV IYLGDYLPFW RWVDPYGCEK EMRDVEKRVD KFHTKIIEEH  840
RRAKREKEDK NIEGDMDFVD VLLSLPGENG KEHMDDVEIK ALIQDMIAAA TDTSAVTNEW  900
AMAEVIKQPR VMRKIQEELD SVVGSNRMVN ESDLVHLNYL RCVVRETFRM HPAGPFLIPH  960
ESVRPTTING YYIPAKTRVF INTHGLGRNT RVWTNDIDEF RPERHLPVDG SGRVEISHGP  1020
DYKILPFSAG KRKCPGAPLG VTMVLMALAR LFHCFDWTTP ENIDTVEVYG MTMPKARPLW  1080
ALAKPRLAAH LYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A2e-8258610794487Ferruginol synthase
5ym3_A2e-8258610794487Ferruginol synthase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1016822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein