PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC156_p15
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 36993.1 Da    PI: 7.1606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC156_p15genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13251296655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  RrC156_p15 251 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 296
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15248305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12249298No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14250302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDSNTRNHLY DPNHISSSSG SGLLRFRSAP SSVLAAFVDD DDDKTGFNSS GRFLNDLNGF  60
DDKSPVSAAL PPPPPPQQPE PSSFLGLPPH YPRQSKGMMM TTIGLDQYLD LNNHHLKPVG  120
SNLLRQSSSP AGMFTNLSGQ NGYGYVGEEE EEEEESPSHS NGLRRHSSLS SRPPPSSLGM  180
LSQIPEIDSE SVQYSHWNDP SSFIHNLSSS SESSLKTETE DDGKLFHGSH LQDSVPCKIR  240
AKRGCATHPR SIAERVRRTK ISERMRKLQE LVPNMDKQTN TADMLDLAVD YIKDLQRQYK  300
RATRLVYIGG SKKTKRKEKK DKEDTMSCLN IF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311319KKTKRKEKK
2314321KRKEKKDK
3314322KRKEKKDKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289817e-75AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153397e-75BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157127e-75BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434876.11e-177PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-132BH130_ARATH; Transcription factor bHLH130
TrEMBLE4MXB61e-135E4MXB6_EUTHA; mRNA, clone: RTFL01-22-A04
TrEMBLV4MCM71e-135V4MCM7_EUTSA; Uncharacterized protein
STRINGXP_006411489.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]