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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC15642_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 164aa MW: 18714.5 Da PI: 10.0175 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC15642_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 43.6 | 7.1e-14 | 83 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV +++++grW A+ g +k +lg+f +eeAa+a++ a+ k +g
RrC15642_p1 83 SIYRGVARHHQQGRWQAR---T---GrvaGNKDLYLGTFAKEEEAAEAYDIAAIKCRG 134
57****************...5...444346**********************99886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MLTPLMEKWL MLKSTLYLGG YDKEDKAARA YDLAALKYWN AAATTNFPIT NYLKELEEMK 60 HMTKLEFIAS LRRKSSGFSR GASIYRGVAR HHQQGRWQAR TGRVAGNKDL YLGTFAKEEE 120 AAEAYDIAAI KCRGINAVTN FEMNRYNVEA IMKSASHRWC SKTS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY585683 | 1e-168 | AY585683.1 Arabidopsis thaliana clone at5g10510 AP2/EREBP transcription factor mRNA, complete cds. |