PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 574aa MW: 66091.2 Da PI: 7.4698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1555_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2e-24	16	104	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHelap 91 +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ gkw+v+++++eHnHel p RrC1555_p5 16 YYKNYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPndgGGKWYVYSFVEEHNHELLP 104 8**************************************99887....9**************9877889************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-22	16	104	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.744	333	369	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-9	339	367	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	344	371	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MLTQMEFDTH EDAYTYYKNY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGSKQQSDD 60 AINPRASPKI GCKASMHVKR RPNDGGGKWY VYSFVEEHNH ELLPDQAHFF RSHRIAAAES 120 DPRLRRKKNN NGPLLLADSK HLTAYHDLGL PRNLDYWSMW QDAFLKKFFK CVYRSCSEEE 180 FDRRWMKLID KFHLRDVEWM RCLYDERSFW APAFMRGVTF AGLSTRYRSE SVNSVFDRYV 240 QGETSVKEFL EGYGVMLEDR YEEEAKADFD AWHEAPELKS PSPFEKQVLL VYTHEIFRKF 300 QLEVLGAAAC HLTKESEEGT TYSVKDFEDD QKYMVEWDES KSDIYCSCRC FEYKGYLCRH 360 AIVVLQMSGV FTIPINYVLQ RWTNAARNRH QISGNLELVQ SNIRRFNDLC RRAIILGEEG 420 SLSQESYDVA MFAMKEAFKQ CAIKVNTIGY PTRCEEAAVQ PGDHIHEDNQ YGSTSKQIGL 480 EHDIQHASGQ GETRREKRSS LNNTSKKPKH VTQSGTVGEG SQEGFQHVVA APRPFQAGLA 540 AQFHSTIPAV FQNVIPAEFH NIPATNMHQN NPPG

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MLTQMEFDTH EDAYTYYKNY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGSKQQSDD  60
AINPRASPKI GCKASMHVKR RPNDGGGKWY VYSFVEEHNH ELLPDQAHFF RSHRIAAAES  120
DPRLRRKKNN NGPLLLADSK HLTAYHDLGL PRNLDYWSMW QDAFLKKFFK CVYRSCSEEE  180
FDRRWMKLID KFHLRDVEWM RCLYDERSFW APAFMRGVTF AGLSTRYRSE SVNSVFDRYV  240
QGETSVKEFL EGYGVMLEDR YEEEAKADFD AWHEAPELKS PSPFEKQVLL VYTHEIFRKF  300
QLEVLGAAAC HLTKESEEGT TYSVKDFEDD QKYMVEWDES KSDIYCSCRC FEYKGYLCRH  360
AIVVLQMSGV FTIPINYVLQ RWTNAARNRH QISGNLELVQ SNIRRFNDLC RRAIILGEEG  420
SLSQESYDVA MFAMKEAFKQ CAIKVNTIGY PTRCEEAAVQ PGDHIHEDNQ YGSTSKQIGL  480
EHDIQHASGQ GETRREKRSS LNNTSKKPKH VTQSGTVGEG SQEGFQHVVA APRPFQAGLA  540
AQFHSTIPAV FQNVIPAEFH NIPATNMHQN NPPG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446587.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A397YS51	0.0	A0A397YS51_BRACM; Uncharacterized protein
STRING	A0A087HIV3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]