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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC1525_p3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
Dof |
Protein Properties |
Length: 213aa MW: 22546.1 Da PI: 9.6208 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC1525_p3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 118 | 3.7e-37 | 24 | 84 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk k+s
RrC1525_p3 24 QQEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKTSKRS 84
57899***************************************************98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MPSDFNEARR LTTKVPQGGA VADQQEQLPC PRCNSTNTKF CYYNNYNFSQ PRHFCKSCRR 60 YWTHGGTLRD IPVGGVSRKT SKRSRAFSSS VAVGSRSFPL QATPVLLPPP SSYGGGKGNP 120 SSPYGGFTTL LSSNNVTAAS RHGPGGGFNG LEGFGLGLGH GGYFDGQGIT FWPFSTGATD 180 AAATSHAAPV VHATWQLEGL ESKVGFVAGD YLA
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB026640 | 2e-52 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. |
GenBank | AB493817 | 2e-52 | AB493817.1 Arabidopsis thaliana At5g66940 gene for hypothetical protein, partial cds, clone: RAAt5g66940. |
GenBank | BT029523 | 2e-52 | BT029523.1 Arabidopsis thaliana At5g66940 mRNA, complete cds. |
GenBank | CP002688 | 2e-52 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |