PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15175_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 313aa    MW: 35199.6 Da    PI: 6.5194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15175_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48e-16111162155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A++YIk+L+
  RrC15175_p1 111 QRMTHIAVERNRRRQMNEHLNSLRSLMPPP---FLQRGDQASIVGGAIDYIKELE 162
                  79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17109180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-13109166No hitNo description
PROSITE profilePS5088816.291110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-13111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGLMRFGGL EEHFSQFSEN AIDEKTPFLQ MLQCIEPTYS TTEPHQILQS LLQSQTLEPE  60
SCLTHETIKR DPGQEEDLVK DPKTEDGATV KEKRKRKRTR APKNKDEVEN QRMTHIAVER  120
NRRRQMNEHL NSLRSLMPPP FLQRGDQASI VGGAIDYIKE LEQLLQSLEA EKQREGASEN  180
PKPASSSSSS SRACTNSSVS SVSPTSEDGF TARFGGGETA EVEATVIQNH ASLKVRCKRG  240
RGQILRAIIS IENLKLSILH LTISSSFDFV FYSFNLKIED GCKVRSADEI TTAVHQIFEQ  300
INGVMMWSNL SRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531010.0AK353101.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-P03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453088.10.0PREDICTED: transcription factor bHLH57
SwissprotQ9M1281e-163BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A0D3DZU51e-180A0A0D3DZU5_BRAOL; Uncharacterized protein
STRINGBo9g004020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]