PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15157_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 195aa MW: 21353.8 Da PI: 4.4912 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.8 | 6.7e-11 | 21 | 49 | 31 | 59 |
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 gC+++k+vers++dp++++itY++eHnh+ RrC15157_p1 21 GCSARKQVERSRTDPNMLVITYTSEHNHP 49 6***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 14.584 | 7 | 51 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-12 | 9 | 51 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-9 | 11 | 50 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-8 | 20 | 49 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-9 | 21 | 51 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MNSRSSGEVV PSDLWAWRKY GCSARKQVER SRTDPNMLVI TYTSEHNHPW PIQRNALAGS 60 TRSSSNPSSS KSSTATTPSN GPPNNTHFSS SASPSPLSAS AIKDEQREED MELKIVEDDD 120 DNQFAPYRQE LHDQHQPDDF FADLEELGGD SLSILLSQGV SSDGNNKTAA SDGISDFFGW 180 SGANNSNNDR ESRSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189628 | 6e-62 | AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491962.1 | 1e-102 | PREDICTED: probable WRKY transcription factor 14 isoform X3 | ||||
Swissprot | Q9SA80 | 5e-83 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | A0A3P5YNE2 | 1e-92 | A0A3P5YNE2_BRACM; Uncharacterized protein | ||||
STRING | Bo5g063280.1 | 1e-91 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 2e-76 | WRKY DNA-binding protein 14 |
Publications ? help Back to Top | |||
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