PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1481_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 400aa    MW: 43812.5 Da    PI: 9.4848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1481_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.5e-30153207358
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 Dgy+W+KYGqK+vkgs+ prsYYrCt+++Cpvkk+vers   ++v ei+Y+geHnh
  RrC1481_p3 153 DGYKWKKYGQKQVKGSDSPRSYYRCTHPKCPVKKRVERSV-GGQVSEIVYQGEHNH 207
                 9***************************************.*************** PP
2WRKY99.42.3e-31327384259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK v g+ +prsYYrCts +C ++k+ver+++dp+++++tYeg+Hnh+
  RrC1481_p3 327 EDGFKWRKYGQKAVGGNAYPRSYYRCTSVNCGARKRVERASDDPRAFITTYEGRHNHH 384
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-26144210IPR003657WRKY domain
SMARTSM007742.5E-29151209IPR003657WRKY domain
SuperFamilySSF1182906.02E-23152210IPR003657WRKY domain
PfamPF031062.0E-23153207IPR003657WRKY domain
PROSITE profilePS5081122.297153210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-30316385IPR003657WRKY domain
PROSITE profilePS5081129.953321386IPR003657WRKY domain
SuperFamilySSF1182901.96E-26322385IPR003657WRKY domain
SMARTSM007744.5E-36326385IPR003657WRKY domain
PfamPF031061.7E-25327384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEVNESERKV IAKPVASRPS YSSVRTFTEL IPDSVTLSPQ SNCHDASIRP DPLRFKQPAA  60
ASVPSPKVEE GNGNGKSCDD SDSRNYVVYK PKAQLVSQAT ISLLANMGWR QSQAAAYGKS  120
VSQGTHREGP NPIPRVPSFT ESKTSTGDRS SVDGYKWKKY GQKQVKGSDS PRSYYRCTHP  180
KCPVKKRVER SVGGQVSEIV YQGEHNHFKP SCPPLPPRAS SSSPLGFQKP PNGLVSEGSM  240
GPSNIYNCQP LWSTQEKMNE GCVLTPFEFA VPRSVSSTGG TSDSGCRSSQ CDEGELDDPS  300
RSKRRRNEKQ SSEAGVSQSS GESDSLEDGF KWRKYGQKAV GGNAYPRSYY RCTSVNCGAR  360
KRVERASDDP RAFITTYEGR HNHHHSQLSP PSSSTLPTTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26153383378Probable WRKY transcription factor 4
2lex_A2e-26153383378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300561e-169KF430056.1 Brassica rapa WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433935.10.0PREDICTED: WRKY transcription factor 44-like isoform X2
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A0D3BR960.0A0A0D3BR96_BRAOL; Uncharacterized protein
STRINGBo4g030720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]