PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14701_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 396aa    MW: 43289.9 Da    PI: 5.1378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14701_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind29.22.3e-091653441
                  HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTH CS
  HSF_DNA-bind  4 kklyeiledeelkeliswsengnsfvvldeeefakkvL 41
                  +klye+++d+++++++swse+g+sf+v+d   f k +L
   RrC14701_p1 16 SKLYEMVDDPSTDSIVSWSESGKSFIVWDDVAFRKALL 53
                  59*******************************99776 PP
2HSF_DNA-bind48.62.2e-15147228289
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                   F++ +y++l+d+++++++swse+g+sfvv+de++f  +vLp+   F  + ++S++ Q +  g++kv+++e+        we++ +++ +g
   RrC14701_p1 147 FIRDVYDMLDDPTVDSVVSWSESGKSFVVWDESKFLGDVLPSrlPFNNKDMTSLTTQFHAIGYNKVEESEH--------WEYASDYLVRG 228
                   99**************************************99667*********************99984........77776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-6697IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.11E-101587IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-91653IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-61653IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-18142230IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-11143234IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-14144230IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-13147230IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.90.770.105.7E-53258384IPR023074Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain
SuperFamilySSF565421.26E-43265371IPR009029Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain
PfamPF003682.7E-45265382IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
PROSITE profilePS5006540.788267382IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
PROSITE patternPS003180313320IPR023076Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site
PROSITE patternPS011920367380IPR023076Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015936Biological Processcoenzyme A metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MYRDKKGEAF VSDRRSKLYE MVDDPSTDSI VSWSESGKSF IVWDDVAFRK ALLLPGGCLG  60
YLGFSQSQSH EQCEYACPYF MRGQPDLKPS QDNLIRKIET DNNKGLNSSN DDGLIRFSSL  120
SCYQEMARLA KKERPPSSSI RCPPPLFIRD VYDMLDDPTV DSVVSWSESG KSFVVWDESK  180
FLGDVLPSRL PFNNKDMTSL TTQFHAIGYN KVEESEHWEY ASDYLVRGQP PPAKDKSTCT  240
PGGLMITPEL ARLIERSFAC SQTISYNIVS AVFIATGQDP AQNVESSQCI TMMEAVNDGK  300
DIHVSVTMPS IEVGTVGGGT QLASQSACLN LLGVKGASPE SPGMNSRRLA TIVAGAVLAG  360
ELSLMSAIAA GQLVKSHMKY NRSSRDISGA MTATTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hw9_A4e-43267395334466HMG-COA REDUCTASE
1hw9_B4e-43267395334466HMG-COA REDUCTASE
1hw9_C4e-43267395334466HMG-COA REDUCTASE
1hw9_D4e-43267395334466HMG-COA REDUCTASE
1hwi_A4e-43267395334466HMG-COA REDUCTASE
1hwi_B4e-43267395334466HMG-COA REDUCTASE
1hwi_C4e-43267395334466HMG-COA REDUCTASE
1hwi_D4e-43267395334466HMG-COA REDUCTASE
1hwj_A4e-43267395334466HMG-COA REDUCTASE
1hwj_B4e-43267395334466HMG-COA REDUCTASE
1hwj_C4e-43267395334466HMG-COA REDUCTASE
1hwj_D4e-43267395334466HMG-COA REDUCTASE
1hwk_A4e-43267395334466HMG-COA REDUCTASE
1hwk_B4e-43267395334466HMG-COA REDUCTASE
1hwk_C4e-43267395334466HMG-COA REDUCTASE
1hwk_D4e-43267395334466HMG-COA REDUCTASE
1hwl_A4e-43267395334466HMG-COA REDUCTASE
1hwl_B4e-43267395334466HMG-COA REDUCTASE
1hwl_C4e-43267395334466HMG-COA REDUCTASE
1hwl_D4e-43267395334466HMG-COA REDUCTASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX686510.0X68651.1 R.sativus mRNA for HMG-CoA reductase (clone lambda cRS3).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482814.10.0PREDICTED: uncharacterized protein LOC108853861
TrEMBLA0A0D3C5F31e-153A0A0D3C5F3_BRAOL; Uncharacterized protein
STRINGBo4g190180.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-25HSF family protein