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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC14644_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 307aa MW: 35481.8 Da PI: 8.1995 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC14644_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 156.3 | 1.3e-48 | 26 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96
pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s +
RrC14644_p1 26 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsS 122
59*******************887774778888***************.5567789**************************************9666 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
++++glkktLv+y g+a kg+ktdW+mhe+rl
RrC14644_p1 123 KAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 154
677***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MEEAMGSWDT RREEQEEEEG KQVLKLPGFR FHPTDEELVG FYLSKKVLLK KSSKIDEIIS 60 QIDIYKFDPW DLPRSRNTEK ESYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSDG 120 SSKAVIGLKK TLVYYLGSAG KGSKTDWMMH EFRLPTANDT IPGGSTLLNP THSSLLHAEV 180 WTLCRIFKRN VSSRKYTPDW RELAGGKRMK PQQSKYQEAY ISFGDNESSS STNIIERKEN 240 YERNVFQLHQ THHDQNQILP MDTTSTTTQV DNTVPHLLND NIDNITYENW DELRSVVEFA 300 FGPSSLS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-45 | 15 | 195 | 10 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB026645 | 1e-103 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. |
GenBank | CP002686 | 1e-103 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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