PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1458_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 758aa MW: 86007.1 Da PI: 7.2737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1458_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2e-05	417	454	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R++ N++f+ Lr ++P+ + ++K +iL +++Y+++L+ RrC1458_p1 417 RSKENEKFSVLRAMVPTvN------EVDKESILNNTIKYLQELE 454 6677***********65......8*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.4E-36	24	264	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.664	404	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-8	410	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.33E-5	417	458	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-8	417	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-8	417	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF49562	1.71E-10	589	701	IPR000008	C2 domain
Pfam	PF00168	8.3E-7	590	668	IPR000008	C2 domain
Gene3D	G3DSA:2.60.40.150	4.0E-8	591	702	IPR000008	C2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MPLTIMADGV EAARGGSKRK NSLLRKQLAV ALRSVQWSYA IFWSSSPTQS GVLEWEEGCY 60 NGDIKKRKKR YEAAHYKYAL QRSNQLRKLY LCMLEGDSNT TISTTHDVND HGDDEEHNCN 120 GTTSMMLSPD DLSDEECLPG RSLATGETIW LCNAQFADNK LFSRSLLARA SLLQPFHFFL 180 LNLDLLKNSL NFSFLSTCLA LHDCSYGFFS LECINSVRTK VECMSYIYVG LLQTVVCFPY 240 LGGVIELGVT ELISEDHSLL QHIKFCLLET SKPDCGSINF SGHQDSDDEK NQMKIKISDG 300 NSNSLLQENH QIQFGISDED VHYKRTVSTL LKYAADKDVH HLQPDQGSSN TGSSFLRWKQ 360 REQPNSILLQ EQSNLQPSSQ NVLRKILQDV PFMPSLDTKR MPPSKMFGLN QDDPWDRSKE 420 NEKFSVLRAM VPTVNEVDKE SILNNTIKYL QELEGRVEEL ESCMGSVNFV ERQRKSVNDS 480 VLIEETSGNY DDSTKIDGNS GETQKVTIMR DETHLRVKLK ETEVVMEVRC SYRDYIVADI 540 METLSKLHMD AFSVRSHTLN GFLTLNLKAK FRGAAVASVG MIKRELRRII GSPVYYVFLQ 600 CGTKEYRSKM SKGDNDNALW NQKFVFDFPM SQWKKLTHIK VRIMDKGLFK DGGFVGETIV 660 HLGGIITEGR DKGYIEVKPA PYNVVLEDGT FKGGLKLGFR FTATDKFHIK KAWEVKIEGK 720 NSEEPMVSPV LNMLKLPLLR HYRFTAAWSR VQAGPINA

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MPLTIMADGV EAARGGSKRK NSLLRKQLAV ALRSVQWSYA IFWSSSPTQS GVLEWEEGCY  60
NGDIKKRKKR YEAAHYKYAL QRSNQLRKLY LCMLEGDSNT TISTTHDVND HGDDEEHNCN  120
GTTSMMLSPD DLSDEECLPG RSLATGETIW LCNAQFADNK LFSRSLLARA SLLQPFHFFL  180
LNLDLLKNSL NFSFLSTCLA LHDCSYGFFS LECINSVRTK VECMSYIYVG LLQTVVCFPY  240
LGGVIELGVT ELISEDHSLL QHIKFCLLET SKPDCGSINF SGHQDSDDEK NQMKIKISDG  300
NSNSLLQENH QIQFGISDED VHYKRTVSTL LKYAADKDVH HLQPDQGSSN TGSSFLRWKQ  360
REQPNSILLQ EQSNLQPSSQ NVLRKILQDV PFMPSLDTKR MPPSKMFGLN QDDPWDRSKE  420
NEKFSVLRAM VPTVNEVDKE SILNNTIKYL QELEGRVEEL ESCMGSVNFV ERQRKSVNDS  480
VLIEETSGNY DDSTKIDGNS GETQKVTIMR DETHLRVKLK ETEVVMEVRC SYRDYIVADI  540
METLSKLHMD AFSVRSHTLN GFLTLNLKAK FRGAAVASVG MIKRELRRII GSPVYYVFLQ  600
CGTKEYRSKM SKGDNDNALW NQKFVFDFPM SQWKKLTHIK VRIMDKGLFK DGGFVGETIV  660
HLGGIITEGR DKGYIEVKPA PYNVVLEDGT FKGGLKLGFR FTATDKFHIK KAWEVKIEGK  720
NSEEPMVSPV LNMLKLPLLR HYRFTAAWSR VQAGPINA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	68	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269\|PubMed:15361138}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493664	0.0	AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBank	AF251697	0.0	AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013684296.1	0.0	transcription factor MYC1-like isoform X2
Swissprot	Q8W2F1	0.0	BH012_ARATH; Transcription factor MYC1
TrEMBL	A0A3P5Y344	0.0	A0A3P5Y344_BRACM; Uncharacterized protein
STRING	Bra037343.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11770	18	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00480.1	1e-176	bHLH family protein