 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC1437_p4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 236aa MW: 24762.9 Da PI: 10.0948 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC1437_p4 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.6 | 8e-07 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
RrC1437_p4 35 KSKPCTKFFSTSGCPFGENCHFLH 58
7789******************** PP
|
| 2 | zf-CCCH | 33.8 | 5.8e-11 | 202 | 227 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+ C +f++ G C +GdrC+FaHg+
RrC1437_p4 202 FKTKMCERFSK-GSCTFGDRCHFAHGE 227
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.84 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.21 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-6 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.0E-8 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.9E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 3.65E-15 | 95 | 176 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.6E-10 | 105 | 175 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 1.1E-14 | 105 | 174 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.508 | 106 | 170 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 5.6E-11 | 108 | 172 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 4.70E-12 | 108 | 170 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 4.7E-16 | 196 | 231 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 201 | 231 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.8E-6 | 201 | 227 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.446 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-7 | 202 | 227 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MDASRKRGPP EASSNGGGGF KKSKLEMEST GLGSKSKPCT KFFSTSGCPF GENCHFLHYV 60
PGGYNAVAQL TNMAPPMPQV SRNMQGPGGG LGRFSGPGHV SSFGASATAK ISVDASLAGA 120
IIGKGGVSSK QIYRQTGAKL TIQDHERDPN LKNIELEGTF EQINEASVMV RELIGRLNSA 180
ARRPPGGGGI GSEGKPHPGS NFKTKMCERF SKGSCTFGDR CHFAHGEAEL RRSGIS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353531 | 0.0 | AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10. |
