PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1432_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 272aa MW: 30176.5 Da PI: 5.1598 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.6 | 6.2e-36 | 12 | 102 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++LpkyFkh+nf+SF+RQLn+YgF+k+ ++ weF++++F++g+++ll++i+ RrC1432_p5 12 FLSKTYQLVDDHTTDDVVSWNEDGTAFVVWETAEFAKDLLPKYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDNFRRGQEDLLSEIR 99 9***************************************************************9999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k RrC1432_p5 100 RRK 102 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.2E-38 | 3 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.5E-59 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.62E-34 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-32 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAAAQRSVPA PFLSKTYQLV DDHTTDDVVS WNEDGTAFVV WETAEFAKDL LPKYFKHNNF 60 SSFIRQLNTY GFRKTVPDKW EFANDNFRRG QEDLLSEIRR RKAVIAAAAE SNSAGDDDDS 120 TSSPGSKNPG SVENMVADLS GENKKLKREN SSLCSELAAA KRQRDELVAF LKDQLKVGPE 180 QIDQMIKGGK FKPNVARDSS SEEESDCEGC GGDGEEEEGV GEGLKLFGVW LKGERKKRGR 240 DEKNFVVGGS HMTEIKNVDF HAPLLKSSKV CN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-27 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 2 | 101 | 20 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138469.1 | 0.0 | PREDICTED: heat stress transcription factor B-1-like | ||||
Refseq | XP_013742532.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Refseq | XP_013742534.1 | 0.0 | heat stress transcription factor B-1-like | ||||
Swissprot | Q96320 | 1e-140 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | M4DMR5 | 0.0 | M4DMR5_BRARP; Uncharacterized protein | ||||
STRING | Bra017800.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-116 | heat shock factor 4 |