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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1415_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 91aa MW: 10717 Da PI: 10.5506 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 127.8 | 3.1e-40 | 2 | 66 | 2 | 66 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGva 66 +++k+e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlP rkkkPvskkk+k+eklkqG++ RrC1415_p2 2 EQGKIESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPQRKKKPVSKKKMKKEKLKQGIQ 66 5789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.6E-35 | 6 | 66 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MEQGKIESKG LNPGLIVLLV IGGLLVTFLV GNFILYTYAQ KNLPQRKKKP VSKKKMKKEK 60 LKQGIQNLER FGSFWWCKME DYFFYLMMMF S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016661 | 6e-63 | AC016661.7 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 6e-63 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 8e-20 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 8e-20 | DNA-binding protein S1FA | ||||
TrEMBL | A0A1J3J4X3 | 3e-21 | A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2 | ||||
STRING | A0A087H8A9 | 2e-20 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |