PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1405_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 372aa    MW: 40892.9 Da    PI: 6.0912
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1405_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.89.9e-28117168456
     G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 ++WtpeLH++Fv+aveqL G++kA+P++ile+m+vk+Lt+++v+SHLQkYR++
  RrC1405_p1 117 VDWTPELHRSFVQAVEQL-GIDKAVPSRILEIMNVKSLTRHNVASHLQKYRSH 168
                 79****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.481111170IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-27113171IPR009057Homeodomain-like
SuperFamilySSF466891.52E-18114171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25115168IPR006447Myb domain, plants
PfamPF002498.0E-7118166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLTVSPLIVN TTSRDNYMAA NFSDFTTEGL PDFTMVGEGS LDLLEGIDYY DDFFIGFDGD  60
DALPELEIDC DIIGEYSGSG RDDEQEMEGD ISTASETSER DGGVVKPDGG ASTHKTVDWT  120
PELHRSFVQA VEQLGIDKAV PSRILEIMNV KSLTRHNVAS HLQKYRSHRK HLLAREAEAA  180
SWNLRRHATV TVAGGGKKPW MAPALGYPPH VTPLHHGHFR PLHVWGHPTW PKHKPNIPSS  240
STHRTYPIPA VAAAPSSWPD HPPYWHQQPL YPQGYGMATP NHSMYNNKSE TSIGVPTSQL  300
SPTTNPPIDI HPSNESIDAA IGDVITKPWL PLPLGLKPPS VDGVMTELQR QGIPNVPPIP  360
CLTCQPLART SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-15119170657Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526330.0AK352633.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-O13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434622.10.0PREDICTED: transcription activator GLK2-like
RefseqXP_018434634.10.0PREDICTED: transcription activator GLK2-like
SwissprotQ9FFH01e-178GLK2_ARATH; Transcription activator GLK2
TrEMBLA0A398AE310.0A0A398AE31_BRACM; Uncharacterized protein
STRINGBra036015.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-166GOLDEN2-like 2
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Han XY, et al.
    GOLDEN2-LIKE transcription factors coordinate the tolerance to Cucumber mosaic virus in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2016. 477(4): p. 626-632
    [PMID:27346129]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C
    LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 582-599
    [PMID:29453227]
  6. Zubo YO, et al.
    Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.
    Plant Physiol., 2018. 178(1): p. 130-147
    [PMID:30002259]