PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 322aa MW: 35768.8 Da PI: 7.021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13731_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vhk+FGasnv kll+++ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++ +ql+++l+ +k RrC13731_p1 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFSYVHKVFGASNVAKLLNEIAANQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRHKQLQQDLENAK 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e RrC13731_p1 105 KE 106 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.8E-92	4	319	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.436	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFSYVH KVFGASNVAK LLNEIAANQR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRHKQLQQDL ENAKKELAAY VGPQAMLPIL 120 QTQHHPQPHF MSLSPQPQPQ PSSSSSASVL THQHHNLFPM MAIPTGQLYH QQQIFEAQQL 180 AVAREQQQNE LFRAFGAGGG SNTSPHNHQN QPQVEVLRFD NSFDFVPTGS VTVTGFNQLS 240 SRGTTVTGMS SSLALGGNFV DSPPTNDSYH TDQQLHHHQK QQHHEAQLFI PTQSSQPLPL 300 QTQETQTQPN SESEEGRRSI IG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439148.1	0.0	PREDICTED: LOB domain-containing protein 36
Refseq	XP_018439149.1	0.0	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-152	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3P6AVY7	0.0	A0A3P6AVY7_BRACM; Uncharacterized protein
STRING	Bra012112.1-P	0.0	(Brassica rapa)
STRING	Bo7g064360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-134	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]