PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13721_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 229aa    MW: 24741 Da    PI: 7.6343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13721_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0591113123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ CgksF++   L  H  +H
  RrC13721_p1  91 YKCSVCGKSFPSYQALGGHKTSH 113
                  9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-990113No hitNo description
PfamPF139121.4E-1491115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002291113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78391118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-9150177No hitNo description
PfamPF139124.8E-12154179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12155177IPR007087Zinc finger, C2H2
SMARTSM003550.35155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MALDTLNSPT STTTTTAPSP FLTEPENLES WTKRKRTKRH RIDDQANPPS EEEYLALCLL  60
MLARGSSDDN HHSSHPPPPP PPPSDHHHRD YKCSVCGKSF PSYQALGGHK TSHRKPVSNN  120
NNNINHDGNS NSGNGSITNN GNISNGLIGR SGKTHKCSIC FKSFPSGQAL GGHKRCHYDG  180
GNGNSYVNGN GSNSHGFDLN LPADQVFEVS CDETLGKSQL SGEETRSPL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469128.11e-132PREDICTED: zinc finger protein AZF1
SwissprotQ9SSW13e-64AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3P6EYY81e-111A0A3P6EYY8_BRAOL; Uncharacterized protein
STRINGBra029985.1-P1e-108(Brassica rapa)
STRINGBo1g081350.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-66C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]