PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13578_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 318aa    MW: 35741 Da    PI: 5.6947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13578_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15122173155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  RrC13578_p1 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 173
                  79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.35E-13120177No hitNo description
Gene3DG3DSA:4.10.280.105.6E-14121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-17121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.719244318IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSFISCKD FQFHDFYFQQ EDNQDPLDTK NKIKLGQEQR QGFPSINYNG  60
KSEDTNYDYN NNDQEHLQWP KDDLLCGSAL DQPPSSDVAA EGGKRKRRRL KSSKNKEEIE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAINYLK ELEHHLQSIE  180
PPLKRTTVPV DTGAAAAADE QTASSVGPFS EFFAFPQYSS RPSSSSVAEG MAEIEVTMVE  240
SHASVKILAK KRPKQLLKLA ASIQSLKLTV LHLNVTTRDD SVLYSISLKV EEGSQLNTVE  300
DIAAGMNQII RRIEEESS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KRKRRR
2104108RKRRR
3105109KRRRL
4122133RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470650.10.0PREDICTED: transcription factor bHLH96-like isoform X1
SwissprotQ9C7T41e-171BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A398AI320.0A0A398AI32_BRACM; Uncharacterized protein
TrEMBLA0A3P6ALL20.0A0A3P6ALL2_BRACM; Uncharacterized protein
STRINGBra008017.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-165bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]