PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC13548_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 14699 Da PI: 11.0398 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00067 | 17 | 39 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs+ L H +H RrC13548_p1 17 FACKTCNKEFSSFQALGGHRASH 39 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H RrC13548_p1 61 HECPICGAEFAVGQALGGHMRKH 83 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.42E-8 | 15 | 83 | No hit | No description |
Pfam | PF13912 | 2.5E-12 | 16 | 41 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 61 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-10 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MNMRVKLNNT RPKSRVFACK TCNKEFSSFQ ALGGHRASHR RSAALEGHAP PSPKRVKPVK 60 HECPICGAEF AVGQALGGHM RKHRGGGGGA SRSLAPDPVT MKKNGGGNGK RVLCLDLNLT 120 PVENEDLKLE LGRFIF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC007184 | 2e-97 | AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence. | |||
GenBank | BT029330 | 2e-97 | BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds. | |||
GenBank | CP002685 | 2e-97 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437975.1 | 1e-80 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 7e-39 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A078FMV0 | 2e-77 | A0A078FMV0_BRANA; BnaC04g15490D protein | ||||
TrEMBL | A0A0D3BU26 | 2e-77 | A0A0D3BU26_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BQH9 | 2e-77 | A0A3P6BQH9_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g069230.1 | 3e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 8e-68 | C2H2 family protein |