PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13544_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 295aa MW: 34433.8 Da PI: 8.6054

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13544_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.5e-11	145	195	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h e+Er+RR+++N + Lr+l+P++ + + + a+i+ A++++k L RrC13544_p2 145 QRMTHIEVERNRRRQMNVHHNSLRSLIPSS---YILRGDQASIVGGAIDFLKIL 195 79**************************...9*************99966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-14	135	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-8	143	200	No hit	No description
PROSITE profile	PS50888	13.802	144	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-11	145	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-8	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-7	150	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
DQKVNERRSL QVQVSPEDQS FPLEEDQHST LTLQGTRTPY LLQMLQDPSS VLSFRDPNIL 60 GNYLPYEVPE TYSPIHSETN HFYQNPFLER TNEDISSQEF QINPVGNAHS RRKRRNNNLE 120 TSMSREKRKR RRNKPTKNRE EMESQRMTHI EVERNRRRQM NVHHNSLRSL IPSSYILRGD 180 QASIVGGAID FLKILEQHLQ SLEAQKMTQQ TSKLKIYATV IERHVNLNIQ CQRKRGELLR 240 SIILLEKLGF TVLHLNLTSP CNASVSYSFN LKMEEECNLG TADEITEAVR QIFDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	131	KRRNNNLETSMSREKRKRRR
2	126	131	KRKRRR
3	127	131	RKRRR
4	127	134	RKRRRNKP
5	145	156	RMTHIEVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022557340.1	1e-171	transcription factor bHLH70-like isoform X1
Swissprot	O81037	1e-131	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A078IFU7	1e-166	A0A078IFU7_BRANA; BnaA04g26770D protein
TrEMBL	A0A3P6CP91	1e-166	A0A3P6CP91_BRACM; Uncharacterized protein
TrEMBL	M4FHA5	1e-166	M4FHA5_BRARP; Uncharacterized protein
STRING	Bra040483.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-129	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]