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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC13422_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 407aa MW: 46899.1 Da PI: 7.1147 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC13422_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.5 | 1.1e-18 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k
RrC13422_p1 28 HRHSTYQIQRLEAYFKECPHPDDSQRHKLGEELKLKPKQIKFWFQNKRTQAK 79
67899********************************************988 PP
|
| 2 | START | 92.3 | 9.4e-30 | 231 | 407 | 2 | 163 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86
++ +a +e+++++ e p+W kss ++en++++ +k++ k+ ++e +++++vv+m++ +lv +ld+ +W + + +a+t+ v++
RrC13422_p1 231 MMVSAVTEVIRLIHTEGPMWIKSSiddrlviDQENYEKSFTKISHLKSpsTRIESSKEVVVVPMDARNLVDMFLDTE-KWARVFStivnEAKTIHVLE 327
577899*************************************88888999**************************.**999999999999999988 PP
TT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
START 87 sg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
s ++ qlm+ +l lsplvp R+f+++R+++q +++ wvi+dvS + + e + + ++pSg+li+ ++ng sk
RrC13422_p1 328 SMdtqrqNFSQLMYEQLHILSPLVPpREFMILRCCQQIEEDLWVIADVSCHHVNIDFE---SPTCSKRPSGCLIQAVPNGLSK 407
87788**********************************************9998764...566888*************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MEFNHDSSSS NELETSMNTT NGDNKIYHRH STYQIQRLEA YFKECPHPDD SQRHKLGEEL 60
KLKPKQIKFW FQNKRTQAKA QIEKAINTSL RAENIRIRRE NEVMQEALKT VTCPPCGGPR 120
LGKEDRQLYL QKLHAQNAYL KGQREQILDF VNNNGGHSIP SVSSFAYRQG PSSYESTSSN 180
PHVSYGTSSN HPIQPPSLER EPYTREHLNI AQQLQHFQPL SQMEKMTMSE MMVSAVTEVI 240
RLIHTEGPMW IKSSIDDRLV IDQENYEKSF TKISHLKSPS TRIESSKEVV VVPMDARNLV 300
DMFLDTEKWA RVFSTIVNEA KTIHVLESMD TQRQNFSQLM YEQLHILSPL VPPREFMILR 360
CCQQIEEDLW VIADVSCHHV NIDFESPTCS KRPSGCLIQA VPNGLSK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
